THE INTERNET IS THINKING
Earlier sources: Science
Science investigates the natural world through observation, experiments, and mathematical models. Explore papers and developments in biology, medicine, materials, neuroscience, physics, climate, and mathematics; a reported finding is not necessarily established consensus.
SYMTRI organizes observations from public sources into a living map. Connections reflect shared subject matter; they do not establish causation or endorse a source.
Open in the map ↗1451 classified signals in the fourteen-day window. Recent momentum: steady. These counts include signals awaiting readable evidence.
Earlier sources
Up to ten sources with readable evidence, ordered by their feed timestamp. These archive sources can be older than the live fourteen-day window. This list is a sample, not a measure of total activity. Dates distinguish paper publication, repository creation, model/dataset activity, Hacker News posts, and KEV catalog additions. “First archived” records when SYMTRI first stored the signal.
- Europe PMC · Published · First archived
Gene dosage effect and reduced core fucosylation in B lymphocytes of FUT8 heterozygous mice ↗
Core fucosylation (alpha1,6-fucosylation) of N-glycans, catalyzed solely by fucosyltransferase 8 (FUT8), plays important roles in development, immunity, and antibody effector functions. Here we report the generation of Fut8 floxed mice using a CRISPR/Cas9-based Extreme Genome Editing (EGE) system, in which loxP sites flank exon 8 of the Fut8 gene and a LoxP-STOP-LoxP-RFP cassette was knocked in downstream of the promoter, rendering the targeted allele functionally null before Cre-mediated recombination. Crossing floxed mice with CMV-Cre transgenic mice yielded complete knockout mice carrying t
- Europe PMC · Published · First archived
A novel mitogenome for Euterpe precatoria (Arecaceae) ↗
Mitochondrial genomes of angiosperms are unusual due to their large size, low gene content, and high structural variation. In the palm family (Arecaceae), mitochondrial architecture is highly dynamic, characterized by expansive sizes, fragmentation, and extensive recombination activity. This biological complexity presents a significant bioinformatic challenge, especially since only three complete palm mitochondrial genomes are publicly available to date. Here, we present the complete mitochondrial genome sequence for the Amazonian palm Euterpe precatoria, assembled de novo using PacBio HiFi lo
- Europe PMC · Published · First archived
A naturally evolved mutation in cavefish mc3r reshapes energy homeostasis across development in a nutrient-limited environment. ↗
Food availability in natural habitats is often unpredictable and drives the selection of adaptive strategies in organisms to survive food scarcity. However, the genetic and molecular mechanisms that enable animals to survive under such nutritional extremes are poorly understood. Naturally adapted organisms therefore provide powerful genetic systems for uncovering the mechanisms that maintain energy homeostasis under nutritional extremes. Here, we leveraged the cavefish Astyanax mexicanus to identify a naturally occurring Thr166Met missense mutation in the melanocortin 3 receptor (mc3r) that re
- Europe PMC · Published · First archived
Generalized Maternal-Paternal Genotype Markov Model for Single-Cell Lineages ↗
Single-cell sequencing provides a rich source of data that can be used to model and estimate the evolution of somatic cells within individuals. Many common models for modeling DNA evolution in phylogenetics are based on continuous-time Markov processes that operate on aligned sites. For haploid DNA, such as found in mitochondria, there are many well established models for these processes but since nuclear DNA is diploid, containing copies of both the maternal and paternal genome, it is natural to develop continuous-time Markov processes adapted to diploid DNA. One possible model is that both t
- Europe PMC · Published · First archived
Parallel differentiation extends beyond chromosomal inversions to small genomic islands on a background of rampant gene flow in the European flat oyster ( Ostrea edulis ) ↗
Heterogeneous genomic landscapes of differentiation can reveal evolutionary processes acting over different timescales. Whereas genetic structure in the European flat oyster, Ostrea edulis , is mainly shaped by geography, previous work suggested parallel differentiation between western and eastern Mediterranean populations and between Atlantic and North Sea populations, resulting in genetic convergence between range margin populations in some genomic regions. Here, we analyzed 27 oysters from four locations using moderate-coverage (~20X) short-read whole-genome sequencing. We first examined th
- Europe PMC · Published · First archived
Recomb-Mix Cloud: a cost-efficient and scalable cloud-friendly pipeline for local ancestry inference ↗
Local ancestry inference (LAI) reveals population compositions of an individual's chromosomes, which empowers population genetics and genetic association studies of diverse populations. The recent availability of large genomic datasets from biobanks offers unprecedented opportunities for LAI. However, such datasets are typically only accessible from cloud-based platforms, and the lack of efficient and cost-effective tooling makes LAI prohibitive for resource-constrained researchers. Here, we develop Recomb-Mix Cloud, a cloud-ready pipeline for LAI based on Recomb-Mix, a recently introduced eff
- Europe PMC · Published · First archived
The uplift of the Qinghai-Tibetan Plateau reshaped genome architecture and diversification of Asian torrent catfishes ↗
Tectonic uplift and mountain building are major drivers of species diversification and adaptation, yet how they reshape genome architecture and promote evolutionary innovation remains poorly understood. Here, we generated multiple chromosome-level genomes for Asian torrent catfishes (Sisoridae) and performed phylogenomic and comparative genomic analyses. Our results support an Asian origin of Sisoridae and provide a refined phylogenetic topology for catfishes. Comparative analyses revealed extensive chromosomal rearrangements during sisorid evolution, indicating highly dynamic genome architect
- Europe PMC · Published · First archived
TMEM106B analysis in diverse cohorts suggests no association with Parkinson's disease risk ↗
Recent evidence suggests that TMEM106B expression is reduced in the brains of patients with Parkinson's disease (PD). However, an association between rare genetic variants in TMEM106B and PD risk has not been previously established. In this work, we investigated the association between rare TMEM106B variants and PD risk. We leveraged whole-genome sequencing data from 22,010 cases and 40,550 controls across diverse ancestries from the Global Parkinson's Genetics Program (GP2), the Accelerating Medicines Partnership in Parkinson's Disease (AMP-PD), and the UK Biobank (UKBB). A total of 4,581 uni
- Europe PMC · Published · First archived
Multiple host species maintain genetic diversity in herbivore populations ↗
How natural populations maintain genetic variation for fitness remains a central problem in evolutionary biology. Theory predicts that opposing selective pressures across environments can preserve fitness-associated polymorphism, but how interactions among species contribute to this process remains poorly understood. Here we show that host diversity preserves standing genetic variation within sexual populations of the leafmining fly Scaptomyza flava . We evolved twelve populations for ten generations on either of two naturally co-occurring host plants or on both, pooling survivors from the two
- Europe PMC · Published · First archived
Connectivity, genetic diversity and adaptive potential of an endangered beetle: genomic evidence for veteran tree management ↗
Habitat fragmentation and destruction in old-growth forests represents a primary threat to specialist species, frequently resulting in the erosion of genetic diversity. The Hermit Beetle, Osmoderma barnabita, is a protected relic of primeval forests and an obligate saproxylic specialist whose larval development depends exclusively on the wood-mould of hollow trees. This study provides the first high-resolution, genome-wide assessment of O. barnabita across seven Polish forest complexes using double-digestion Restriction-site Associated DNA sequencing data from 49 individuals. Following rigorou
Live window recorded . This is the ingestion observation time, not the publication or discovery date of each source.
How to assess evidence about Science
Check each original source for its methods, release status, limitations, and supporting data. A repository announcement, a preprint, and a published study provide different kinds of evidence. SYMTRI’s subject classification helps discovery; it does not independently validate the source’s claims.
See the collection and counting methodology ↗ · Read the weekly synthesis ↗
Follow a thread
Explore related regions
These navigation suggestions are part of the map’s editorial structure, rather than measured evidence of a connection.